Mass Spectrometry Facility

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Mass Spec General Info

What is mass spectrometry? - a tutorial.

A more in-depth tutorial.

A good overview of the quadrupole ion trap mass spectrometer.

The Little Encyclopedia of Mass Spectrometry

JEOL - pages summarizing ionization techniques and elemental composition calculations.

Matrix Science has a help section with good introductions to MS/MS fragmentation, MS accuracy and resolution and quadrupole ion traps.

 

MS Tools

MALDI sample preparation guide

PROWL - lots of info and tools for protein mass spectrometry.

Ion Source - another excellent reference: calculators, tables and tutorials.

Mongo oligo mass calculator - for oligonucleotides.

Novatia has a SEQUEST tips page, also see the interactive SEQUEST tutorial.

Codon Usage Database

Expasy Proteomics Tools

Electrospray deconvolution:  calculate parent mass from multiply-charged ions or m/z from a parent mass.

UCSF's Protein Prospector - many tools.

Formula to mass to formula calculator

NIST Chemistry WebBook

Aminocalc - a useful program for de novo interpretation of MS/MS data.  The download link seems to be broken so try here.

 

Journals

Analytical Chemistry

Electrophoresis

JMS

JASMS - journal of the ASMS

Journal of Proteome Research

Nature Biotechnology

Proteomics

Rapid Communications in Mass Spectrometry

 

Databases

NCBI

SwissProt

Yeast

MSDB

Fruitfly

DOE JGI